Pairwise fitting emdb-1430 on pdb-3j79 by gmfit



Pairwise fitting of target emdb-1430 on reference pdb-3j79 by gmfit(PID:4091538).

RANK[1] Corr.Coeff:0.829 [JSmol] [Molmil]
TARGET(emdb-1430)
display:
color:
Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1430)]
REFERENCE(pdb-3j79)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.829 0.809 0.778 0.769 0.761 0.761 0.755 0.753 0.751 0.719

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j79"(PDB-format) or "3j79"(mmCIF-format), and read it.
  2. Download the Target map "emd_1430.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.862904,-0.488217,-0.130543 24.781208 center 0,0,0 model #1
    move 241.336256,235.863261,224.883953 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j79)] [Download the target GMM(emdb 1430)] [Download gmfit result file(4091538)]