Pairwise fitting emdb-1430 on pdb-3dg5 by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-3dg5 by gmfit(PID:368612).





RANK[1] Corr.Coeff:0.760

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.760
0.735
0.729
0.716
0.706
0.688
0.684
0.674
0.669
0.663







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg5"(PDB-format) or 
 "3dg5"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.812550,-0.369119,0.451125 179.095878 center 0,0,0 model #1
move -5.840978,2.468615,-27.372427 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!