Pairwise fitting emdb-1430 on pdb-2rdo by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-2rdo by gmfit(PID:386942).





RANK[1] Corr.Coeff:0.916

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-2rdo)

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b'50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND                            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.916
0.761
0.755
0.744
0.720
0.713
0.712
0.710
0.709
0.706







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2rdo"(PDB-format) or 
 "2rdo"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.148226,0.961481,-0.231480 1.174235 center 0,0,0 model #1
move 0.489838,0.193162,0.529578 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!