Pairwise fitting emdb-1390 on pdb-5jlf by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-5jlf by gmfit(PID:539734).





RANK[1] Corr.Coeff:0.554

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-5jlf)

display:



color:


b'STRUCTURE OF THE F-ACTIN-TROPOMYOSIN COMPLEX (REPROCESSED)            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.554
0.550
0.490
0.487
0.330
0.280
0.280
0.273
0.266
0.257







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5jlf"(PDB-format) or 
 "5jlf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.273273,0.830345,0.485644 177.305022 center 0,0,0 model #1
move 3.276059,1.275345,-3.172970 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!