Pairwise fitting emdb-1390 on pdb-5aey by gmfit



Pairwise fitting of target emdb-1390 on reference pdb-5aey by gmfit(PID:4124166).

RANK[1] Corr.Coeff:0.593 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(pdb-5aey)
display:
color:
b'ACTIN-LIKE PARM PROTEIN BOUND TO AMPPNP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.593 0.521 0.490 0.488 0.359 0.347 0.341 0.269 0.255 0.243

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5aey"(PDB-format) or "5aey"(mmCIF-format), and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.617208,0.532909,-0.578846 95.380933 center 0,0,0 model #1
    move 2.273684,-1.951285,15.332577 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5aey)] [Download the target GMM(emdb 1390)] [Download gmfit result file(4124166)]