Pairwise fitting emdb-1390 on pdb-5aey by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-5aey by gmfit(PID:4094775).





RANK[1] Corr.Coeff:0.593

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-5aey)

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color:


b'ACTIN-LIKE PARM PROTEIN BOUND TO AMPPNP                               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.593
0.521
0.490
0.488
0.359
0.347
0.341
0.269
0.255
0.243







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5aey"(PDB-format) or 
 "5aey"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.617208,0.532909,-0.578846 95.380933 center 0,0,0 model #1
move 2.273684,-1.951285,15.332577 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5aey)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4094775)]