Pairwise fitting emdb-1390 on pdb-4c4q by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4c4q by gmfit(PID:4119647).





RANK[1] Corr.Coeff:0.505

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4c4q)

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color:


b'CRYO-EM MAP OF THE CSFV IRES IN COMPLEX WITH THE SMALL RIBOSOMAL 40S  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.505
0.374
0.364
0.294
0.206
0.196
0.168
0.167
0.167
0.157







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4c4q"(PDB-format) or 
 "4c4q"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.516151,0.536145,-0.667935 168.275357 center 0,0,0 model #1
move 276.644547,177.337278,280.325587 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4c4q)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4119647)]