Pairwise fitting emdb-1390 on pdb-4bx4 by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4bx4 by gmfit(PID:4112614).





RANK[1] Corr.Coeff:0.602

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4bx4)

display:



color:


b'FITTING OF THE BACTERIOPHAGE PHI8 P1 CAPSID PROTEIN INTO CRYO-EM      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.602
0.597
0.574
0.538
0.352
0.265
0.225
0.224
0.213
0.187







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bx4"(PDB-format) or 
 "4bx4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.806213,-0.551358,-0.214534 171.963824 center 0,0,0 model #1
move 240.956189,296.803940,210.932939 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bx4)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4112614)]