Pairwise fitting emdb-1390 on pdb-4btq by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4btq by gmfit(PID:210599).





RANK[1] Corr.Coeff:0.564

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4btq)

display:



color:


b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS FITTED INTO THE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.564
0.551
0.549
0.530
0.522
0.335
0.231
0.178
0.167
0.158







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4btq"(PDB-format) or 
 "4btq"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.049272,-0.381815,-0.922924 160.930945 center 0,0,0 model #1
move -52.118624,53.121011,219.552691 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!