Pairwise fitting emdb-1390 on pdb-3zpk by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3zpk by gmfit(PID:1289114).





RANK[1] Corr.Coeff:0.404

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3zpk)

display:



color:


b'ATOMIC-RESOLUTION STRUCTURE OF A QUADRUPLET CROSS-BETA AMYLOID FIBRIL.' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.404
0.400
0.395
0.384
0.179
0.174
0.097
0.095
0.091
0.088







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3zpk"(PDB-format) or 
 "3zpk"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.673382,-0.391735,-0.626977 36.780806 center 0,0,0 model #1
move 4.102102,-5.703120,-262.187721 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!