Pairwise fitting emdb-1390 on pdb-3j9b by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3j9b by gmfit(PID:4191458).





RANK[1] Corr.Coeff:0.501

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3j9b)

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b'ELECTRON CRYO-MICROSCOPY OF AN RNA POLYMERASE                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.501
0.493
0.480
0.471
0.449
0.441
0.424
0.410
0.262
0.256







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9b"(PDB-format) or 
 "3j9b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.637876,-0.485935,0.597479 146.585029 center 0,0,0 model #1
move 173.096651,168.025507,132.215978 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j9b)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4191458)]