Pairwise fitting emdb-1390 on pdb-3j5y by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3j5y by gmfit(PID:134107).





RANK[1] Corr.Coeff:0.468

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3j5y)

display:



color:


b'STRUCTURE OF THE MAMMALIAN RIBOSOMAL PRE-TERMINATION COMPLEX          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.468
0.457
0.427
0.422
0.368
0.303
0.272
0.261
0.254
0.243







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j5y"(PDB-format) or 
 "3j5y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.584544,-0.497048,-0.641289 95.124258 center 0,0,0 model #1
move 244.183241,182.172790,263.106799 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!