Pairwise fitting emdb-1390 on pdb-3j4k by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3j4k by gmfit(PID:403676).





RANK[1] Corr.Coeff:0.543

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3j4k)

display:



color:


b'CRYO-EM STRUCTURES OF THE ACTIN:TROPOMYOSIN FILAMENT REVEAL THE       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.543
0.513
0.463
0.416
0.308
0.298
0.272
0.269
0.266
0.263







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4k"(PDB-format) or 
 "3j4k"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.587480,-0.738726,-0.330381 138.466831 center 0,0,0 model #1
move 188.049069,189.596629,192.635444 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!