Pairwise fitting emdb-1390 on pdb-3c6r by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3c6r by gmfit(PID:4190573).





RANK[1] Corr.Coeff:0.587

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3c6r)

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color:


b'LOW PH IMMATURE DENGUE VIRUS                                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.587
0.534
0.523
0.491
0.276
0.219
0.218
0.189
0.174
0.171







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3c6r"(PDB-format) or 
 "3c6r"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.660842,0.750395,0.013969 151.998646 center 0,0,0 model #1
move 29.539401,-31.278727,212.842842 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3c6r)]

[Download the target GMM(emdb 1390)]

[Download gmfit result file(4190573)]