Pairwise fitting emdb-1390 on pdb-2yn9 by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-2yn9 by gmfit(PID:419027).





RANK[1] Corr.Coeff:0.581

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-2yn9)

display:



color:


b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.581
0.560
0.560
0.550
0.511
0.301
0.293
0.286
0.235
0.217







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yn9"(PDB-format) or 
 "2yn9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.547491,-0.801982,-0.238912 135.882771 center 0,0,0 model #1
move 25.694481,26.462848,-47.348783 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!