Pairwise fitting emdb-1386 on pdb-4uis by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-4uis by gmfit(PID:4170404).





RANK[1] Corr.Coeff:0.528

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-4uis)

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b'THE CRYOEM STRUCTURE OF HUMAN GAMMA-SECRETASE COMPLEX                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.528
0.494
0.427
0.397
0.380
0.344
0.243
0.225
0.224
0.169







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4uis"(PDB-format) or 
 "4uis"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.477321,0.873401,-0.096615 82.930686 center 0,0,0 model #1
move 134.319132,129.218747,131.894513 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4uis)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4170404)]