Pairwise fitting emdb-1386 on pdb-4cau by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-4cau by gmfit(PID:1260051).





RANK[1] Corr.Coeff:0.522

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-4cau)

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color:


b'THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.522
0.462
0.422
0.410
0.401
0.348
0.204
0.202
0.161
0.146







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4cau"(PDB-format) or 
 "4cau"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.402329,0.090825,-0.910979 71.523782 center 0,0,0 model #1
move 22.699439,-32.306751,221.801567 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!