Pairwise fitting emdb-1386 on pdb-4bx4 by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-4bx4 by gmfit(PID:4090825).





RANK[1] Corr.Coeff:0.606

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-4bx4)

display:



color:


b'FITTING OF THE BACTERIOPHAGE PHI8 P1 CAPSID PROTEIN INTO CRYO-EM      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.606
0.575
0.571
0.537
0.420
0.321
0.269
0.224
0.214
0.203







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bx4"(PDB-format) or 
 "4bx4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.049330,0.442601,-0.895361 40.546953 center 0,0,0 model #1
move 240.947874,292.736428,215.826189 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bx4)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4090825)]