Pairwise fitting emdb-1386 on pdb-4btq by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-4btq by gmfit(PID:6094).





RANK[1] Corr.Coeff:0.573

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-4btq)

display:



color:


b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS FITTED INTO THE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.573
0.572
0.553
0.549
0.520
0.231
0.187
0.181
0.170
0.161







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4btq"(PDB-format) or 
 "4btq"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.157544,0.908683,-0.386620 166.504929 center 0,0,0 model #1
move -53.927955,47.944936,217.462007 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4btq)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(6094)]