Pairwise fitting emdb-1386 on pdb-4btq by gmfit



Pairwise fitting of target emdb-1386 on reference pdb-4btq by gmfit(PID:6094).

RANK[1] Corr.Coeff:0.573 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(pdb-4btq)
display:
color:
b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS FITTED INTO THE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.573 0.572 0.553 0.549 0.520 0.231 0.187 0.181 0.170 0.161

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4btq"(PDB-format) or "4btq"(mmCIF-format), and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.157544,0.908683,-0.386620 166.504929 center 0,0,0 model #1
    move -53.927955,47.944936,217.462007 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4btq)] [Download the target GMM(emdb 1386)] [Download gmfit result file(6094)]