Pairwise fitting emdb-1386 on pdb-4bgn by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-4bgn by gmfit(PID:38957).





RANK[1] Corr.Coeff:0.442

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-4bgn)

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color:


b'CRYO-EM STRUCTURE OF THE NAVCT VOLTAGE-GATED SODIUM CHANNEL           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.442
0.375
0.369
0.360
0.343
0.257
0.245
0.187
0.169
0.165







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bgn"(PDB-format) or 
 "4bgn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.547090,-0.681964,0.485404 136.680433 center 0,0,0 model #1
move 13.572768,88.413488,6.728080 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bgn)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(38957)]