Pairwise fitting emdb-1386 on pdb-3zpk by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3zpk by gmfit(PID:411003).





RANK[1] Corr.Coeff:0.385

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3zpk)

display:



color:


b'ATOMIC-RESOLUTION STRUCTURE OF A QUADRUPLET CROSS-BETA AMYLOID FIBRIL.' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.385
0.354
0.350
0.348
0.190
0.171
0.113
0.112
0.084
0.083







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3zpk"(PDB-format) or 
 "3zpk"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.861925,0.501326,-0.075878 151.937932 center 0,0,0 model #1
move 7.524576,-1.380271,-264.669245 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!