Pairwise fitting emdb-1386 on pdb-3j8a by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3j8a by gmfit(PID:187357).





RANK[1] Corr.Coeff:0.568

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3j8a)

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b'STRUCTURE OF THE F-ACTIN-TROPOMYOSIN COMPLEX                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.568
0.542
0.502
0.479
0.318
0.295
0.294
0.278
0.271
0.269







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j8a"(PDB-format) or 
 "3j8a"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.142383,-0.866046,-0.479261 178.559569 center 0,0,0 model #1
move 0.297089,1.075894,-3.781677 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!