Pairwise fitting emdb-1386 on pdb-3j24 by gmfit



Pairwise fitting of target emdb-1386 on reference pdb-3j24 by gmfit(PID:4096804).

RANK[1] Corr.Coeff:0.468 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(pdb-3j24)
display:
color:
b'CRYOEM RECONSTRUCTION OF COMPLEMENT DECAY-ACCELERATING FACTOR ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.468 0.423 0.388 0.352 0.210 0.185 0.181 0.161 0.159 0.150

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j24"(PDB-format) or "3j24"(mmCIF-format), and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.140853,0.989149,-0.041765 136.076488 center 0,0,0 model #1
    move 37.731598,-14.551336,149.160530 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j24)] [Download the target GMM(emdb 1386)] [Download gmfit result file(4096804)]