Pairwise fitting emdb-1386 on pdb-3j24 by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3j24 by gmfit(PID:4096804).





RANK[1] Corr.Coeff:0.468

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3j24)

display:



color:


b'CRYOEM RECONSTRUCTION OF COMPLEMENT DECAY-ACCELERATING FACTOR         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.468
0.423
0.388
0.352
0.210
0.185
0.181
0.161
0.159
0.150







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j24"(PDB-format) or 
 "3j24"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.140853,0.989149,-0.041765 136.076488 center 0,0,0 model #1
move 37.731598,-14.551336,149.160530 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j24)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4096804)]