Pairwise fitting emdb-1386 on pdb-3a69 by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3a69 by gmfit(PID:4104769).





RANK[1] Corr.Coeff:0.453

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3a69)

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b'ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.453
0.441
0.439
0.412
0.361
0.270
0.232
0.224
0.208
0.189







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3a69"(PDB-format) or 
 "3a69"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.054208,0.745036,-0.664818 178.979864 center 0,0,0 model #1
move -9.288657,55.117825,15.852814 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3a69)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4104769)]