Pairwise fitting emdb-1386 on pdb-3a69 by gmfit



Pairwise fitting of target emdb-1386 on reference pdb-3a69 by gmfit(PID:4124836).

RANK[1] Corr.Coeff:0.453 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(pdb-3a69)
display:
color:
b'ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.453 0.441 0.439 0.412 0.361 0.270 0.232 0.224 0.208 0.189

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3a69"(PDB-format) or "3a69"(mmCIF-format), and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.054208,0.745036,-0.664818 178.979864 center 0,0,0 model #1
    move -9.288657,55.117825,15.852814 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3a69)] [Download the target GMM(emdb 1386)] [Download gmfit result file(4124836)]