Pairwise fitting emdb-1386 on pdb-2w4w by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-2w4w by gmfit(PID:4095745).





RANK[1] Corr.Coeff:0.520

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-2w4w)

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color:


b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.520
0.457
0.450
0.423
0.381
0.375
0.289
0.248
0.247
0.241







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2w4w"(PDB-format) or 
 "2w4w"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.318639,-0.155093,-0.935102 81.775451 center 0,0,0 model #1
move -87.579143,-24.839934,73.818005 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2w4w)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4095745)]