Pairwise fitting emdb-1386 on emdb-8294 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-8294 by gmfit(PID:459739).





RANK[1] Corr.Coeff:0.520

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-8294)

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Structure of 2x duplex target DNA-bound Cascade/I-C [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.520
0.498
0.432
0.429
0.410
0.392
0.392
0.310
0.271
0.250







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8294.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.903107,-0.285425,-0.320828 146.728933 center 0,0,0 model #1
move 171.419076,163.508804,145.323864 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!