Pairwise fitting emdb-1386 on emdb-5874 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-5874 by gmfit(PID:681360).





RANK[1] Corr.Coeff:0.605

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-5874)

display:



color:


Single-particle reconstruction of conformation XIV of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.605
0.603
0.524
0.499
0.483
0.455
0.420
0.225
0.186
0.167







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5874.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.974942,0.221103,-0.024520 71.820953 center 0,0,0 model #1
move 22.278565,-16.708994,20.604070 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!