Pairwise fitting emdb-1386 on emdb-3241 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-3241 by gmfit(PID:544047).





RANK[1] Corr.Coeff:0.418

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-3241)

display:



color:


Cryo-EM reconstruction of caspase-1 CARD [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.418
0.417
0.376
0.356
0.339
0.337
0.337
0.318
0.231
0.230







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3241.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.557340,0.554392,0.618079 151.880134 center 0,0,0 model #1
move -0.309483,5.153269,0.266366 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!