Pairwise fitting emdb-1386 on emdb-2258 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-2258 by gmfit(PID:149171).





RANK[1] Corr.Coeff:0.590

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-2258)

display:



color:


negative stain single-particle reconstruction of conformation XI of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.590
0.487
0.485
0.396
0.280
0.266
0.250
0.246
0.239
0.227







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2258.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.768956,-0.633220,0.087968 162.230409 center 0,0,0 model #1
move 169.883383,179.019746,170.384618 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!