Pairwise fitting emdb-1384 on pdb-5jlf by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-5jlf by gmfit(PID:4120439).





RANK[1] Corr.Coeff:0.553

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-5jlf)

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color:


b'STRUCTURE OF THE F-ACTIN-TROPOMYOSIN COMPLEX (REPROCESSED)            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.553
0.537
0.488
0.440
0.397
0.322
0.300
0.281
0.271
0.266







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5jlf"(PDB-format) or 
 "5jlf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.018487,0.470801,-0.882046 164.367740 center 0,0,0 model #1
move -0.032430,-2.620687,3.356247 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5jlf)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(4120439)]