Pairwise fitting emdb-1384 on pdb-5jlf by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-5jlf by gmfit(PID:4060641).

RANK[1] Corr.Coeff:0.553 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-5jlf)
display:
color:
b'STRUCTURE OF THE F-ACTIN-TROPOMYOSIN COMPLEX (REPROCESSED) ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.553 0.537 0.488 0.440 0.397 0.322 0.300 0.281 0.271 0.266

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5jlf"(PDB-format) or "5jlf"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.018487,0.470801,-0.882046 164.367740 center 0,0,0 model #1
    move -0.032430,-2.620687,3.356247 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5jlf)] [Download the target GMM(emdb 1384)] [Download gmfit result file(4060641)]