Pairwise fitting emdb-1384 on pdb-4btg by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4btg by gmfit(PID:4185662).





RANK[1] Corr.Coeff:0.612

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4btg)

display:



color:


b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS (P1A AND P1B)   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.612
0.603
0.560
0.548
0.435
0.276
0.268
0.246
0.193
0.171







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4btg"(PDB-format) or 
 "4btg"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.914939,-0.375045,0.149093 128.367745 center 0,0,0 model #1
move -21.829431,72.380746,158.051591 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4btg)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(4185662)]