Pairwise fitting emdb-1384 on pdb-4btg by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-4btg by gmfit(PID:34844).

RANK[1] Corr.Coeff:0.612 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-4btg)
display:
color:
b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS (P1A AND P1B) ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.612 0.603 0.560 0.548 0.435 0.276 0.268 0.246 0.193 0.171

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4btg"(PDB-format) or "4btg"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.914939,-0.375045,0.149093 128.367745 center 0,0,0 model #1
    move -21.829431,72.380746,158.051591 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4btg)] [Download the target GMM(emdb 1384)] [Download gmfit result file(34844)]