Pairwise fitting emdb-1384 on pdb-4bgn by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4bgn by gmfit(PID:810548).





RANK[1] Corr.Coeff:0.447

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4bgn)

display:



color:


b'CRYO-EM STRUCTURE OF THE NAVCT VOLTAGE-GATED SODIUM CHANNEL           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.447
0.388
0.373
0.365
0.353
0.205
0.192
0.172
0.158
0.155







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bgn"(PDB-format) or 
 "4bgn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.543511,-0.680861,0.490943 138.074565 center 0,0,0 model #1
move 13.637776,88.645298,6.374867 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bgn)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(810548)]