Pairwise fitting emdb-1384 on pdb-3edl by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3edl by gmfit(PID:346373).





RANK[1] Corr.Coeff:0.558

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3edl)

display:



color:


b'KINESIN13-MICROTUBULE RING COMPLEX                                    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.558
0.480
0.470
0.458
0.442
0.435
0.279
0.257
0.185
0.179







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3edl"(PDB-format) or 
 "3edl"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.549118,-0.114100,0.827919 77.735997 center 0,0,0 model #1
move 172.823091,405.414426,106.708200 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!