Pairwise fitting emdb-1384 on pdb-3c6r by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3c6r by gmfit(PID:854488).





RANK[1] Corr.Coeff:0.566

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3c6r)

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color:


b'LOW PH IMMATURE DENGUE VIRUS                                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.566
0.517
0.513
0.499
0.318
0.268
0.256
0.209
0.190
0.181







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3c6r"(PDB-format) or 
 "3c6r"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.649850,0.759955,0.012785 152.007984 center 0,0,0 model #1
move 29.442173,-31.377666,212.889781 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3c6r)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(854488)]