Pairwise fitting emdb-1384 on pdb-2yn9 by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-2yn9 by gmfit(PID:152666).





RANK[1] Corr.Coeff:0.586

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-2yn9)

display:



color:


b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.586
0.573
0.558
0.543
0.394
0.287
0.269
0.251
0.228
0.221







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yn9"(PDB-format) or 
 "2yn9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.542152,-0.803741,-0.245092 137.045621 center 0,0,0 model #1
move 25.358514,25.955647,-46.806342 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!