Pairwise fitting emdb-1384 on pdb-2y83 by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-2y83 by gmfit(PID:4058168).

RANK[1] Corr.Coeff:0.533 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-2y83)
display:
color:
b'ACTIN FILAMENT POINTED END ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.533 0.530 0.511 0.477 0.317 0.299 0.298 0.294 0.250 0.246

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2y83"(PDB-format) or "2y83"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.001927,0.547020,-0.837118 164.032523 center 0,0,0 model #1
    move 60.169959,64.988565,75.253516 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2y83)] [Download the target GMM(emdb 1384)] [Download gmfit result file(4058168)]