Pairwise fitting emdb-1384 on emdb-9553 by gmfit



Pairwise fitting of target emdb-1384 on reference emdb-9553 by gmfit(PID:4112181).

RANK[1] Corr.Coeff:0.507 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(emdb-9553)
display:
color:
Single particle reconstruction of CNTNAP2: conformation #3 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.507 0.433 0.423 0.405 0.166 0.159 0.157 0.117 0.112 0.107

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_9553.map.gz", and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.258824,0.087082,0.961991 129.761887 center 0,0,0 model #1
    move 47.543329,58.026106,60.670141 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 9553)] [Download the target GMM(emdb 1384)] [Download gmfit result file(4112181)]