Pairwise fitting emdb-1384 on emdb-5884 by gmfit



Pairwise fitting of target emdb-1384 on reference emdb-5884 by gmfit(PID:4089529).

RANK[1] Corr.Coeff:0.601 [JSmol] [Molmil]
TARGET(emdb-1384)
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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(emdb-5884)
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Single-particle reconstruction of conformation II of GPCPP-bound and NO-bound sGC [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.601 0.588 0.489 0.473 0.397 0.246 0.204 0.199 0.193 0.174

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5884.map.gz", and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.902436,0.198137,0.382558 124.942565 center 0,0,0 model #1
    move 21.104377,-9.531625,14.856891 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5884)] [Download the target GMM(emdb 1384)] [Download gmfit result file(4089529)]