Pairwise fitting emdb-1384 on emdb-5865 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-5865 by gmfit(PID:4165099).





RANK[1] Corr.Coeff:0.615

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-5865)

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Single-particle reconstruction of conformation V of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.615
0.538
0.506
0.476
0.334
0.289
0.231
0.200
0.192
0.168







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5865.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.994684,-0.102931,0.002978 51.629149 center 0,0,0 model #1
move 19.377115,-9.053107,16.658290 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5865)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(4165099)]