Pairwise fitting emdb-1384 on emdb-5017 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-5017 by gmfit(PID:4120191).





RANK[1] Corr.Coeff:0.475

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-5017)

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Segmented eEF2 density from the cryo-EM map of eEF2-bound 80S complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.475
0.463
0.458
0.455
0.334
0.325
0.253
0.234
0.223
0.223







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5017.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.667798,-0.626907,-0.401289 165.129647 center 0,0,0 model #1
move -26.718535,40.101673,-69.309138 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5017)]

[Download the target GMM(emdb 1384)]

[Download gmfit result file(4120191)]