Pairwise fitting emdb-1384 on emdb-5017 by gmfit



Pairwise fitting of target emdb-1384 on reference emdb-5017 by gmfit(PID:4057939).

RANK[1] Corr.Coeff:0.475 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(emdb-5017)
display:
color:
Segmented eEF2 density from the cryo-EM map of eEF2-bound 80S complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.475 0.463 0.458 0.455 0.334 0.325 0.253 0.234 0.223 0.223

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5017.map.gz", and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.667798,-0.626907,-0.401289 165.129647 center 0,0,0 model #1
    move -26.718535,40.101673,-69.309138 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5017)] [Download the target GMM(emdb 1384)] [Download gmfit result file(4057939)]