Pairwise fitting emdb-1369 on pdb-4v19 by gmfit



Pairwise fitting of target emdb-1369 on reference pdb-4v19 by gmfit(PID:4101279).

RANK[1] Corr.Coeff:0.792 [JSmol] [Molmil]
TARGET(emdb-1369)
display:
color:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1369)]
REFERENCE(pdb-4v19)
display:
color:
b'STRUCTURE OF THE LARGE SUBUNIT OF THE MAMMALIAN MITORIBOSOME, PART 1 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.792 0.734 0.732 0.730 0.728 0.717 0.703 0.701 0.700 0.697

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v19"(PDB-format) or "4v19"(mmCIF-format), and read it.
  2. Download the Target map "emd_1369.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.311881,0.581412,-0.751458 90.479113 center 0,0,0 model #1
    move 238.058280,226.684700,212.696068 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v19)] [Download the target GMM(emdb 1369)] [Download gmfit result file(4101279)]