Pairwise fitting emdb-1369 on pdb-3j98 by gmfit



Pairwise fitting of target emdb-1369 on reference pdb-3j98 by gmfit(PID:4093440).

RANK[1] Corr.Coeff:0.618 [JSmol] [Molmil]
TARGET(emdb-1369)
display:
color:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1369)]
REFERENCE(pdb-3j98)
display:
color:
b'STRUCTURE OF 20S SUPERCOMPLEX DETERMINED BY SINGLE PARTICLE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.618 0.618 0.605 0.603 0.583 0.581 0.580 0.575 0.574 0.573

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j98"(PDB-format) or "3j98"(mmCIF-format), and read it.
  2. Download the Target map "emd_1369.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.947387,-0.041908,0.317335 137.802210 center 0,0,0 model #1
    move 18.274321,24.606767,9.616029 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j98)] [Download the target GMM(emdb 1369)] [Download gmfit result file(4093440)]