Pairwise fitting emdb-1369 on pdb-3j98 by gmfit










Pairwise fitting of target emdb-1369 on reference pdb-3j98 by gmfit(PID:915993).





RANK[1] Corr.Coeff:0.618

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1369)

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Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1369)]







REFERENCE(pdb-3j98)

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b'STRUCTURE OF 20S SUPERCOMPLEX DETERMINED BY SINGLE PARTICLE           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.618
0.618
0.605
0.603
0.583
0.581
0.580
0.575
0.574
0.573







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j98"(PDB-format) or 
 "3j98"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1369.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.947387,-0.041908,0.317335 137.802210 center 0,0,0 model #1
move 18.274321,24.606767,9.616029 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j98)]

[Download the target GMM(emdb 1369)]

[Download gmfit result file(915993)]