Pairwise fitting emdb-1369 on pdb-3j3w by gmfit










Pairwise fitting of target emdb-1369 on reference pdb-3j3w by gmfit(PID:374576).





RANK[1] Corr.Coeff:0.787

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1369)

display:



color:



Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1369)]







REFERENCE(pdb-3j3w)

display:



color:


b'ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.787
0.778
0.733
0.715
0.712
0.710
0.697
0.694
0.689
0.681







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j3w"(PDB-format) or 
 "3j3w"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1369.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.667427,0.660039,-0.344804 83.061523 center 0,0,0 model #1
move -0.705019,-6.706183,-19.084049 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!