Pairwise fitting emdb-1315 on pdb-3dg2 by gmfit










Pairwise fitting of target emdb-1315 on reference pdb-3dg2 by gmfit(PID:4183282).





RANK[1] Corr.Coeff:0.795

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1315)

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Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1315)]







REFERENCE(pdb-3dg2)

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color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF A     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.795
0.762
0.711
0.690
0.689
0.667
0.666
0.665
0.650
0.644







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg2"(PDB-format) or 
 "3dg2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1315.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.055281,-0.114889,-0.991839 179.127288 center 0,0,0 model #1
move 0.530634,3.232679,-1.292077 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3dg2)]

[Download the target GMM(emdb 1315)]

[Download gmfit result file(4183282)]