Pairwise fitting emdb-1311 on pdb-4v79 by gmfit










Pairwise fitting of target emdb-1311 on reference pdb-4v79 by gmfit(PID:1391910).





RANK[1] Corr.Coeff:0.881

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(pdb-4v79)

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 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.881
0.735
0.720
0.709
0.704
0.701
0.683
0.671
0.669
0.665







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v79"(PDB-format) or 
 "4v79"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.783538,-0.218639,0.581606 134.634728 center 0,0,0 model #1
move 183.133208,171.654824,190.546343 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v79)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(1391910)]