Pairwise fitting emdb-1311 on pdb-3jcd by gmfit










Pairwise fitting of target emdb-1311 on reference pdb-3jcd by gmfit(PID:452603).





RANK[1] Corr.Coeff:0.887

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(pdb-3jcd)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.887
0.731
0.717
0.702
0.701
0.688
0.679
0.667
0.663
0.660







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jcd"(PDB-format) or 
 "3jcd"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.785397,-0.364526,0.500273 64.180372 center 0,0,0 model #1
move 202.365410,199.692480,206.587904 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!