Pairwise fitting emdb-1311 on emdb-2422 by gmfit



Pairwise fitting of target emdb-1311 on reference emdb-2422 by gmfit(PID:4127032).

RANK[1] Corr.Coeff:0.866 [JSmol] [Molmil]
TARGET(emdb-1311)
display:
color:
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1311)]
REFERENCE(emdb-2422)
display:
color:
Molecular architecture of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.866 0.738 0.715 0.709 0.702 0.702 0.683 0.676 0.664 0.663

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2422.map.gz", and read it.
  2. Download the Target map "emd_1311.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.602860,-0.401345,-0.689552 10.099079 center 0,0,0 model #1
    move 2.240828,-4.592544,-6.804447 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2422)] [Download the target GMM(emdb 1311)] [Download gmfit result file(4127032)]