Pairwise fitting emdb-1311 on emdb-2275 by gmfit



Pairwise fitting of target emdb-1311 on reference emdb-2275 by gmfit(PID:4130807).

RANK[1] Corr.Coeff:0.773 [JSmol] [Molmil]
TARGET(emdb-1311)
display:
color:
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1311)]
REFERENCE(emdb-2275)
display:
color:
Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.773 0.739 0.735 0.715 0.714 0.705 0.682 0.682 0.675 0.672

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2275.map.gz", and read it.
  2. Download the Target map "emd_1311.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.627181,-0.402160,-0.667017 80.483827 center 0,0,0 model #1
    move 20.962623,1.852214,-4.048001 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2275)] [Download the target GMM(emdb 1311)] [Download gmfit result file(4130807)]