Pairwise fitting emdb-1311 on emdb-1345 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-1345 by gmfit(PID:16729).





RANK[1] Corr.Coeff:0.849

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-1345)

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Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.849
0.771
0.738
0.702
0.687
0.687
0.681
0.681
0.668
0.665







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1345.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.904800,0.373590,0.204370 2.061963 center 0,0,0 model #1
move -6.448915,-7.224606,-12.546714 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1345)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(16729)]