Pairwise fitting emdb-1252 on pdb-5ipr by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-5ipr by gmfit(PID:433337).





RANK[1] Corr.Coeff:0.595

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-5ipr)

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color:


b'CRYO-EM STRUCTURE OF GLUN1/GLUN2B NMDA RECEPTOR IN THE DCKA/D-APV-    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.595
0.515
0.496
0.492
0.448
0.441
0.435
0.409
0.399
0.375







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ipr"(PDB-format) or 
 "5ipr"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.449510,-0.318391,0.834607 148.109468 center 0,0,0 model #1
move 244.819937,317.780727,-101.993416 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!