Pairwise fitting emdb-1252 on pdb-4upb by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-4upb by gmfit(PID:300236).





RANK[1] Corr.Coeff:0.596

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-4upb)

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b'ELECTRON CRYO-MICROSCOPY OF THE COMPLEX FORMED BETWEEN THE HEXAMERIC  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.596
0.499
0.477
0.466
0.459
0.443
0.437
0.419
0.367
0.361







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4upb"(PDB-format) or 
 "4upb"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.038250,-0.282934,-0.958376 115.899281 center 0,0,0 model #1
move -129.166013,102.566515,-220.920532 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!